software
we will attempt to satisfy requests for software which has no cost to the tsc (e.g., open source, complimentary licenses, free for academic use, software paid for by a user or by a department, etc.). requests for software that would incur a cost to the tsc will be considered on a case-by-case basis.
| package | description | latest version |
|---|---|---|
| abinit | find total energy, charge density and electronic structure of systems made of electrons and nuclei within dft | 6.12.3 |
| octave | high-level interpreted language, primarily intended for numerical computations. compatible with matlab | 3.6.4 |
| gate | simulations of emission tomography (pet and spect), computed tomography (ct) and radiotherapy experiments | 6.1.0 |
| galaxy | web-based platform for data intensive biomedical research | |
| r | language and environment for statistical computing and graphics. mostly compatible with the s language. | 3.2.3 |
| eclipse | eclipse ide for java developers | 4.4 (luna) |
| javajdk | java se development kit 8 (jdk) | 1.8.0_40 |
| rstudio | integrated development environment (ide) for r | |
| blender | 3d computer graphics software for interactive 3d applications, visualization, animated films, etc. | 2.59.4 |
| jags | just another gibbs sampler | 3.1.0 |
| scilab | software for numerical computation | 5.3.3 |
| openbugs | package for performing bayesian inference using gibbs sampling | 3.2.1 |
| openmm | a toolkit for molecular simulation | 6.0.1 |
| tisean | nonlinear time series analysis | 3.0.1 |
| ess++ | bayesian variable selection for linear regression using evolutionary monte carlo | 0.1.0 |
| python | programming language (epd 7.2.2 distro with numpy & 100+ addons) | 2.7.2 |
| gcc | gnu compiler collection ( c, c++, fortran) | 4.6.3 |
| lapack | lapack libraries for numerical linear algebra | 3.0 |
| blas | blas (basic linear algebra subprograms) library | 3.0 |
| gsl | gnu scientific library for numerical analysis | 1.13 |
| cuda sdk | parallel computing architecture for scientific computing on nvidia gpus | 3.2 |
| marvinbeans | ||
| macaulay2 | ||
| openmpi | ||
| platformmpi | platform mpi implementation | 7.01 |
| mpich1 | ||
| mpich2 | ||
| vnc viewer | windows client to connect to vnc servers. |